Scaffold Ga0335031_0008288

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0008288
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7672
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (27.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011074	Metagenome	295	N
F019816	Metagenome	227	Y
F020348	Metagenome	224	N
F033030	Metagenome / Metatranscriptome	178	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0008288_1532_1768	F019816	N/A	MRELLPFERQMLLAEVYHYAWYNEEAYEDLLAFIKKYEKKLDKPVFFNPINNNDTETTNLEPLAFGQNLDTNPGSNKV
Ga0335031_0008288_1902_2096	F033030	N/A	MEQKKWSAGAWKKQTTKGEVINFTIENVKYSMWVNAYKTEDKQPDYKIYVNDFKPKEDTEGLPF
Ga0335031_0008288_3395_3976	F011074	N/A	MQLVGINTPGDVKLAILEDWIRTEYGGFTINEVKVAFKQMVANDFIDHYQNFSPAYFSQVMDRYKKKANEVRKMIPQERVEAIPHLTDLEIIDYSYQEYKVLENRTFDRLFNPLSVFTKLNSTGIKVWTKEDGALAKKKLMEIITYKANKMDIISAKQYRDEWTEQWLKNQARAVAVALFFEEQIKIGKVSFS
Ga0335031_0008288_4980_5216	F020348	GGA	MEIEHRKFLDDNVGNWHTVQNGYVRNIDLDILKMYEHIYRKYMNPDFILTVWCSHCIFDMIKRLYEWYDLQPKNKKNG