Scaffold Ga0335031

Basic Information
Taxon OID	3300034104 Open in IMG/M
Scaffold ID	Ga0335031_0008117 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034104 Open in IMG/M

Scaffold ID

Ga0335031_0008117 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7747
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (16.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

7747

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (16.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011074	Metagenome	295	N
F019816	Metagenome	227	Y
F020348	Metagenome	224	N
F025481	Metagenome	201	Y
F033030	Metagenome / Metatranscriptome	178	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0008117_1289_1537	F020348	GGA	MEINHRNYLDLHRPNYEMVQNGYVRNIDLDILKMYEHIYRKYMNPDFILTVWCSHCIFDMIKRLYEWYDIQPQPKKKNAKGN
Ga0335031_0008117_2541_3209	F011074	N/A	MEREIMQGFSGERIRSLNSTIFKQNLVYLMQLVGITNPGEVKLAILEDWIISEYGYFTINEVKVAFKQMVANDFIDHYQNFSPAYFSQVMERYKKKANEVRKMIPQERVEAIPHLTDLEIIDYSYQEYKLLENRTFDKLFNPLSVFTKLNATGIKKWTKEDGALAKKKLMEIITYKANKMDIITAKQYRDEWTEQWLKNQARAVAVALFFDLQIKNGKVSFS
Ga0335031_0008117_4416_4610	F033030	N/A	MEQKKWSTGAWKNTTAKGEVINFTINDVKYSMWVNAYKTEDKQPDYKIYVNDFKPKEDTERLPF
Ga0335031_0008117_4744_4980	F019816	GAG	MKELLPFERQILLAEVYHYAWYNEEAYSDLLAFIDKYQTILDKPVFLTQIPNNDTETTNLEPLAFGQNLDTNSGANEI
Ga0335031_0008117_5702_5884	F025481	N/A	MFQYQRYGNILIDGSRSTTNPYDPALLPKNYDYEDDDYTFTRWVENNAELELLKTEVYED

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335031_0008117

Overview

Ecosystem & Geography

Associated Families

Sequences