NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0006526

Scaffold Ga0335031_0006526


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0006526 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8689
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012648Metagenome / Metatranscriptome278Y
F013758Metagenome268Y
F014378Metagenome / Metatranscriptome263Y
F031078Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0006526_1899_3149F013758GGAMSAYTPDFKVLINGEELTEVTIADLTVTSGRTDIYQQPVAGYCQLQLLNLDNSAYDFTVGSGLTVEVTDSVGAYIPIFGGLISDFTITVNSTGQLGYTTLATITALGALSKLPKTIDEGILSQDFDGDQIYSLLSGYLLGSWNDVSPALTWANYNPTETWANAANLGLGEIDQPGNYELISRSSSDTDLYSLCTAIATSAFGVLYEDANGNISYADSTHRQDYLANNGYTILDANHANGIGLSATTRSGDLRNSFTITYDNNGNQSYTATDAESQSLYGVYAESYLSLIKKTVDAEDLADRYIALRAFPYPKFQNITFVLGNPEIDDSDRDALINIFLGRPVWIQNLPPNITGGSFQGYIEGWTFRATLNNLTVTFNASPINFSQIAVKWEQVNAAETWNTLNPALTWLTAIGAVA
Ga0335031_0006526_234_383F031078AGGAGGMEAIIYATLGLIAIPVIRQAIKSYRAKKAVGDIVADALEAAVDTVEKKK
Ga0335031_0006526_5188_5454F012648GGAGMQQNITIKYNDGTETIYQVRPPDYAKWELTTKKVISQFGGMWDILFVTHSAMKRDAGGKTVKPLDVWMESITDVEVGDENPKVIQEEA
Ga0335031_0006526_8543_8689F014378N/AIRFSLDEFLRTDALQRAQVYEILNRIGAMSVEQIQEEEDLIHNEGENA
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