Scaffold Ga0335031_0005823

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0005823
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9184
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (8.70%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008751	Metagenome / Metatranscriptome	328	Y
F029027	Metagenome / Metatranscriptome	189	Y
F045624	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0005823_1149_1367	F008751	N/A	MTNVLIFIAGQAILIIGGLIGIYVKVSLKLKELEIRVHVVEKQDDQISRKLDTIAQQLNQLSIQLQNKQDRE
Ga0335031_0005823_4220_4531	F045624	N/A	MNAADKLKVFNEITNHSFVEISLTYARNYEKNPKAFISAYKQYNSIRLVCDWIVYTYKYIGAFDECKALGKDFTDWANRQDVDNKYKKGLAEFMLIIYSIIKK
Ga0335031_0005823_4528_5064	F029027	N/A	MSNPAFDYLRQFKKISDDTEALVTKFIKKKYPELGMKELVQIFENGIAGEYGKVYSADPETILDWIRKHITNKGQQRSYYEQPLLTADVSMYDNRYPEKQEDWNKEVNKAFTSFLNGTSTTQMHPHIYDRLMVDGKIPLNAYLKHYTNDVTIAKQQTLKDYFVTCKDKGYTYIYFIKQ