Scaffold Ga0335031_0004979

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0004979
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9922
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (20.83%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022872	Metagenome	212	Y
F027829	Metagenome	193	N
F041159	Metagenome / Metatranscriptome	160	Y
F067260	Metagenome	126	N
F083794	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0004979_1_267	F041159	N/A	MSQISKLGYVDNKLGAPSSGQQTTRILFNTIEAPGTTSSLTFFKNFQGLTQGQTNLTQNKLDSMESMVIKTIWLAQYTTGGVVSEVGGN
Ga0335031_0004979_3292_3705	F027829	N/A	MAFTNRFEADISPKKTRIDPKAMQQTIDIPIGSNPDTGKTYSFRVYIAVSKMQKKLNYAPTILITITFFKYKLHLQSRDVKAIVSAFNKLSTFIDTASPNLENKLSQELLTYDQWEKEYFERKNMGIININREEYKK
Ga0335031_0004979_7168_7386	F067260	AGG	MGITIMTHFDKIVDPDLKRCETPEQMLQVLMYHYDLDCKLGTITSLAFRQGLKTAVNMIAAKAKSQSSALQN
Ga0335031_0004979_7358_7999	F083794	N/A	MTATQATKQLLDMGCVFLSIVDIEGNTIVPKQQNKFTTPADIKKQADKINTYLKTAPNGTYVIEGRIGGTSKPTQIVIDKGEAAPAIAVNNSAPSRGISDPGAESVLSYRAALDMQNQIATLTAENNRLRDLVEALEGDLADIEEAQPEQMAESPAMGALGQLAAILPAVVDKWFENQKENREIEKAKLYQAAQARQAQAQYQSNGHNDYDSL
Ga0335031_0004979_7999_8823	F022872	N/A	MSWQIPQQIEQDIIAGKAQYRTFQTGVGGQSILPVPTNAYAVVFGYDFSPAGGGIKRSTEIASPSTFGNLTDLTNSEIRFFETQQISFYTGTDFFPFIHHVDVKTTGILGRWNAAVPDDNFGINNIVIEEIDSTPIARQVYITSDKDITISVGLILDSDVATTGAIPITNRTPALLTYGGSPQTPAVQTDFGPAATPIQFMQPSPKDFQDFGFGLLPNNANGQAFATPDATRGLIDPSVYLTSLGATFRDAAAANYFLCLHYALYTRTIPEQRG