Scaffold Ga0335031_0001685

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0001685
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16644
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (78.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012767	Metagenome	277	Y
F049573	Metagenome	146	Y
F066715	Metagenome	126	Y
F102618	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0001685_15129_15371	F102618	AGGAG	MIANETSPAENEYLAAVAGLHEQTVSPAHKKPEPAVGDFVSGCTAGRRWSGRVEWVNDRGEICVNTDGSWVYVPVADITH
Ga0335031_0001685_16128_16364	F049573	N/A	MVVALPEGRKLIGTAEAAKILGVSMGRIRQLALLDPADGGIQSWLAAPTARVFDEAEIRKRAKAKRTTGRKRGGFKAN
Ga0335031_0001685_4704_5078	F012767	GGA	VRGVTATISLTAFRADWMTHMPMRALCERWTISRDQVIRLAVVWELPRRHDRKLRAKPVRQRDPTTTEIQQACIQIQATWSDDVREDRRVTKTQLVSLKRIPLDSETREHTAYDGDAHLWEANR
Ga0335031_0001685_61_417	F066715	AGGAG	MADNIISRKNRDIDITLATATASATTLDLRDVAGAVVSFGTMSTNASTLQMWVGTTPAGTFRRLYKADGSVADLTLAASSTDGRAYALPDEVFGVEYLKIVSATTNSTGTVGVVMLKS