NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0001238

Scaffold Ga0335031_0001238


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0001238 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19332
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010835Metagenome / Metatranscriptome298N
F013879Metagenome / Metatranscriptome267N
F023575Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0001238_16480_16956F023575N/AMALSKGLALVYGAKGTIKLYTVGVANALTEITTGTITTIESYDASHEADVEQIKNSAGEVVAQVSANERISLNITFIPSASTFAQSKLAASLPKVNGYAAIAGSDATTVGGGSIDGDYVYSGGGSVKFTSSGKVMVTITVTKYLDASALTGTAAVFTL
Ga0335031_0001238_16969_17451F010835GGAMNGVALRTERALVDWLAAQDWSASPLGTPACLTSYGHGAFTDPDLEDRMPDFPRIVVRSSTAVPVHPIDRTCEVDVTATLQLSADDTPEYNVLATVAAFEDILQPLFVDDNISELNVGDSDPSGGFTAFFATPTDFGVNDTSERARTFSRSMRIFAAANS
Ga0335031_0001238_17448_18230F013879GGAGMTPKITVDKSRFDRAWSRYVLLTGRSMADVVNSRTFFLMLRLYCLLPPKSPQASRNKILDYLNRPVGVRKKDKKTGKFLGRSRELRLVHLIAQSRNKKAGNEGLYGPTMREAAASLRRRAAGSVGYLKSCVVKAIKKLSPSFQQFGGTRRVRKGSAGVKIVAGNQALINLANQYGLPQENVSVHRGSSAYAYKAKTGQHTYSMVKMNLGLADNQMGKVGSIYAKAMNQAYNDEAKELEDHIKAKLEEVSGVLEENGITVQ
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