Scaffold Ga0335031

Basic Information
Taxon OID	3300034104 Open in IMG/M
Scaffold ID	Ga0335031_0001040 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034104 Open in IMG/M

Scaffold ID

Ga0335031_0001040 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21264
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (14.89%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

21264

Total Scaffold Genes

47 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (14.89%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F012010	Metagenome / Metatranscriptome	284	Y
F064715	Metagenome / Metatranscriptome	128	Y
F071153	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0001040_15724_16077	F071153	N/A	MFTGKFIKKDGKLTYADPKDKLAYDIFISKLEEGQIIDMYLDLASVDHSKAQLAKVHACIRELAKESGYSFDDMKLLIKQNAGLEGKSFAECSKEQIALAIESCIQIGRENFNLSLG
Ga0335031_0001040_17111_17698	F012010	N/A	MTDIFTRLIQEGLTPNTYYVLHCIREKIVPHKSVNKELECKRLQTDHWLTENLELTSKSLIFMEEINGYFKRTKKKTSQDLMGQDFVRNIEKYVEIFPNKKLSSGKYARVNAKNLEAPFRWFFENYDYDWEEIMKATEKYVDEFSIRRYEFMRTAQYFIRKQNIDKSFESDLATYCEIIRSGDDEEQVYFSEKVV
Ga0335031_0001040_5375_5875	F000716	N/A	MIKKMYKMEKLKQEIKNYQLNAGKTYMQYETDRYSQYQNYLYKRALYGLNALSEQELATMCSKKKQRIVNVYKRAQVVINKLKQEFTIRYTNFIFKTLFPNSPLTDSLLACTEFDDKFKNTLTFKDLDITKEDIITIFIAEGILPKNFLSLNKDPNQLPKLKNQKA
Ga0335031_0001040_6902_7081	F064715	N/A	MSDFDKKQIKEVADKSEDVGNTLYDEYKKNKKLETAKVSIAAFRNTLYANSLLIKAEKL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335031_0001040

Overview

Ecosystem & Geography

Associated Families

Sequences