Scaffold Ga0335031_0000993

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335031_0000993

Scaffold Ga0335031_0000993

Overview

Basic Information
Taxon OID	3300034104 Open in IMG/M
Scaffold ID	Ga0335031_0000993 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	21783
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (51.52%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013175	Metagenome / Metatranscriptome	273	Y
F017098	Metagenome / Metatranscriptome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0000993_15965_16630	F017098	N/A	MDKEQLKQHIMDNLINSDAELNRWDALQPTDPEYMMHSPIPVGYNTTSEQRFLMQNLLVGFAGGSLLDIGCGRCDLYGVASNLAALNNDTVLYNAIDHNPIMTQLGEQKWGLNNVNVGAFETAKLNKHDWVVASGVFTQRRCETEDDDLRKLFTDIDTLYNLSSQVVSFNLMNPINTHHHEGFFYTHPGLIMDMLIEKYQFVNIRCNYSKDVYTVLIYKLQ
Ga0335031_0000993_6202_6696	F013175	N/A	MDSKTLVKALKIAVREVIKEELTEILREGLQSTITEMKQSTKTNSDRSTAQPVKKQKVLFTENRWADILNETNSLVEQEPMVMNSFKDIMNEGMEEIRMTSRDAANFGAMRQNMKEAMGLAPAAPKVMEDPETGKVFEVPQEVQQAMTRDYSALMKAINNKKGK

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