Scaffold Ga0335031_0000990

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0000990
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21846
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (67.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F007110	Metagenome / Metatranscriptome	357	Y
F061803	Metagenome / Metatranscriptome	131	Y
F089832	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0000990_14782_14946	F061803	N/A	LIIQGGKVQIEITKSEAHKILDAIKAYSNDYVVTGAVSKTFDNITIKMKSIINS
Ga0335031_0000990_19196_19429	F089832	GGAG	MAKYYIKCGTLELIYSTDKKPFGAAKDALWETNKFDVLDEYFYVDERGFKDYATALSDTKVYKSAKVIQKAGWALED
Ga0335031_0000990_19605_20309	F000325	AGGAG	MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARTAGFANVVTEKNKIRAMILEAKRREKSIRWHERGDWFLNGELDLDYLANVTWACESILADGDSLPDMWFYTHIYDSRLVSLEKYMNVYASVHDDNDMGEALVQGFKLFAWCDSDMKVAPKRPKNKAKADAWRKALPKLVVLNATKFVVCPEIRRGRSVITCTGTKDSISCDMCVKGLANVLFPAH
Ga0335031_0000990_7354_7572	F007110	AGG	MNCIYCYKTIPDERLEFLVETNRTLVCINCSKETRAVGFMDWNHKTAPSLVMVPANAKETIRILDRANRRSR