Scaffold Ga0335031_0000600

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0000600
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27921
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (24.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F019140	Metagenome / Metatranscriptome	231	N
F021113	Metagenome / Metatranscriptome	220	Y
F023350	Metagenome / Metatranscriptome	210	N
F027518	Metagenome / Metatranscriptome	194	N
F036240	Metagenome / Metatranscriptome	170	N
F039140	Metagenome / Metatranscriptome	164	Y
F071242	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0000600_12563_13300	F012871	GGA	MLRNASTTTLSITQRVDRAERESAFVADYDLPAFVKLSSKVCAMYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELSKKTEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAESKEEESKQLKEKEMAVNDDSWRRMLAEDIASYKKGKYTVIEIRAVSLIRWLEEANYITADTFTDDEYKLCKAKARKTVFNEQQLSKGMVERMSDRKRQLLKESIQFEGLRELYKLYLSKQ
Ga0335031_0000600_15681_15893	F019140	N/A	MKNTPLYESLKMTYDREREIVNSLANYFQQGKILGDILLELSQRKDLNAKEKIYLALMIGSMMSKPNEEQ
Ga0335031_0000600_16480_17055	F021113	AGGA	MRKNLLFAVLLVLGTSIIWTVICWNRWGRSVAKNATTEIQKQDSVINYNAGEYDRLLQEQIELYKQLRTYEDAQSKAKTTYQRTRDIVLVRDTITRVDVVRLVNSCDSVIASDSLVINNLKEQLNIEGEKIDNLQEVVDAYEQKEDILTEEINSLNAEKKKLDKQKKRRNHALIFTTSVAALSTFVLSVLL
Ga0335031_0000600_18001_18282	F039140	N/A	MKEKLKSWLKELLSSSTKVSSKRIISIFVVLNLIAFAYIATFSIYNCPIEMFDTLAILAGSLFGGTVIEKFTKQKTNGETKERSTEDSSGDLQ
Ga0335031_0000600_18279_18527	F027518	N/A	MNTETEIALIHEQLQEMDKKIDRIYNVLIGDDEMKIEGLVSKVQKHDKYIQNQRLQVARLSGIAATAGVIGGLIVQLVLKAI
Ga0335031_0000600_268_873	F036240	AGGA	MANESSAPNFFAVVNDMAKRFVELMQSDYRMKRKVGKNFTNAVASGTLEKSLKYRLQIKGQNINVSVYAKGKAGQYFLFRENGVNGTQKSQGAPYSFKKGSGSKPAKGQMSPMQKAIYDWMTIKGIRLRDKSSGKFKKSTEELKQQVAKLIMFKVRRDGIKGWKAFDYAMENIWDEYESKVVAAYQKDFTATIENQFNEIQ
Ga0335031_0000600_27152_27370	F071242	N/A	MEATSKEQVQNKANAMVACLEFIKLNVKSNCEFGRIANGKRKLKLWKHYAWKVTRISVNLAFWIFILYKLLS
Ga0335031_0000600_7057_7557	F023350	N/A	VTLEKYIEGHYKKFKELAKNISRGEDYYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLAVNSPTSPFYKQTIAWNRNRRDFKEYAHEVDKTWLGARMTNEQLDILISRLSEFERLIFQEYIFEGFTYRELSKQTGIPMPFLYRTIDNIKQKIRANVIRKK