NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0000560

Scaffold Ga0335031_0000560


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0000560 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28757
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (22.92%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002018Metagenome / Metatranscriptome603Y
F034186Metagenome175N
F035312Metagenome172Y
F036698Metagenome169Y
F080976Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0000560_18922_19461F034186N/AMKRMLDQYIQKNYTEVLKYTKHFIQRLKIPSSIEADAVINNAYLHCVKLEMDEVTEDKAKSYLLNTIKYELIWTQGSRTKKDDIYRSHEYLGDSLDDSSDIEHKVNLEESYNFKKAMVEIYRNSLDDRIKKIIFEAYYDKGHSTQTALAKYFDINSTSAFFLIKEIKQNIKEIQYRYKD
Ga0335031_0000560_28289_28756F002018N/AMTSYQALINKIEAFYNDHLQVKKVGSDFNEQLPNFATKDERYPLVFITPIVASTTMDVNTISLEVYCLDIIQKDRANITVILSDCHQILVDLINYFNFSNDYSFDIVGSPSITPLNNQLLDYAAGWVMTLDVDISNWTNCQVPLKFPVVVGCETIS
Ga0335031_0000560_7520_7810F035312N/AMGFNEVAFTIITILLSGIGYFLKNVHGDIKAVVDEQKKIIGDVGALRGKIDLVDNESRFRSDSIEKMTQLEIKHLAEHISELTQSVKKLIEIQITR
Ga0335031_0000560_8586_8861F080976N/AMKEPKKKKDININIDTKNVDIKVTRKDGVTDVKVDTPKVDVDFHKESDSKSLKIDTEKVDVQVTNGEVNVDVNEQSGLIGKLIKLILRRKK
Ga0335031_0000560_9891_10064F036698N/AMKATHRVWLEDSVEKLGGFWWYCYLDHNGCLQDEKYHDDLPETPQWYINNGYKVEEL
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