NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0000549

Scaffold Ga0335031_0000549


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0000549 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29120
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (19.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024267Metagenome / Metatranscriptome206Y
F028780Metagenome / Metatranscriptome190N
F030696Metagenome184Y
F040591Metagenome / Metatranscriptome161Y
F088520Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0000549_11015_11296F040591N/AMKIKDEYKGKTIVKNTTLGNMTVVVDNIDVNRYRYYVSIGFGYLFEKETTTAPEQCIRYEGIEADEQTEAPKVTKPKRKRKTNAKANTKRNQG
Ga0335031_0000549_11280_11813F028780N/AMKATLDRYISSHYEELYRYTRYFCSKYNPKLTIDTVISNAYLHCLEINDNTEDVGKVKSYILNSIKRQVIWKNVNSFKDERILASELSVPDTFDDGEDLNYKIAIEQKYQGWKSSVDIYRDGLTDNVKIAVANAYFDKGLTTARSMASYFNIPNTSAHYLIADIKNTLKSIHYENKR
Ga0335031_0000549_12331_12489F024267N/AMKIEITHYGHKASYEFDHEDVELEDLIYHIEQLIRLTGYSINGTLEIVKDEQ
Ga0335031_0000549_19516_19833F088520N/AMKNTESKYWFTELSSDIATHTIIVEVYTRQDDEKIGEIELIYNYDKNNNYEEWTIESTEWDKELTLKECDDAMQELIDNATENFHEFAFECFHYDPRDDEFSWFI
Ga0335031_0000549_21307_21717F030696GAGMKILSLILAIFATSCTANYHLRKAIKKGYRCDEVGDTIRITSIDSIPYVVNDSIVWEKVLVQKDTIVRYKTSYVPKTRWQTRIEYKLKRDTIRQVQKIEVAKYKSQKEKPNFWVLILGFVIGMGTMYLFRYSKSNI
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