NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0000532

Scaffold Ga0335031_0000532


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0000532 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29656
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (16.98%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002018Metagenome / Metatranscriptome603Y
F002391Metagenome / Metatranscriptome564Y
F025465Metagenome201Y
F031032Metagenome / Metatranscriptome183Y
F039051Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0000532_14906_15358F002018N/AMISYQSLINKIITFYDNHLQVKKVGSDFREQLENFATKDEKYPLVYICPVDAVPSEMGFTTEINLEIYCFDIIQKDRANINVILSDCHLILNDIYNWFLNSDDYSFDIVGVPTMTPLNNDLLDYAAGWVMTVTCSINNYTDCQVPEQNED
Ga0335031_0000532_21907_22137F039051N/AVIDLNKLFEIIKKQGATGVLALWLFYTHTEVQELKQRLYECYGKTEQQFEKELDKETSFVIIPKDEVNEKLKNLIS
Ga0335031_0000532_26411_26704F025465N/AMDELTIITGKVNLDTTYLKIKLSLEEIKERASNRYDLIHSMERSLADLQQVKISYDAMEKELRAALQQNFRLEKLLMEEKFKNKDLETQLNFKDVTL
Ga0335031_0000532_2666_2866F031032GGAGMSVILKSDYYIIFMNPNKHKKEWNAMRLIMNVAEINYCIFIDYNLNYLEFHPVTKQEFRDYQYNPN
Ga0335031_0000532_7147_7419F002391N/AMSTNLMGELVANKGTFILNNTNEFTGVIDAIVVLEDTVFNSVKIANTDVKTQYIGTAATAVKAGAIITPKSDLQFSGVKLTSGSVALVLG
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