Scaffold Ga0335031_0000505

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0000505
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30286
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (80.36%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F015731	Metagenome / Metatranscriptome	252	Y
F020909	Metagenome	221	Y
F033806	Metagenome	176	N
F077306	Metagenome	117	Y
F089589	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0000505_12931_13260	F015731	N/A	MGVNMSVEIETGVVDFDANTAAWLEQYKSAVAKIKELQEVADVARAHIERALGDNETGMFLNRPVVRYSFVESRRFDTKRAREILPSQVIEALEVVSTSRRFSIVNEDN
Ga0335031_0000505_14454_14825	F033806	AGG	MNLDQFKQPRDPLFSIHNHSDGHIALYLEEQDAVKDLVQDVVGAYELDDLDLLRHSADRSVKSENYFEHLDNARDNLGENAPLLCNMSEQEALILAEDLIRAVKFARIGREAQGNYPALKAVE
Ga0335031_0000505_15954_16190	F089589	AGG	MSNRLWVDDNGSVLCDAHSGTYLRAGFEANNQAIQHKTPLGTWCAYYTNLLGGKDLVCEVCVPWNSPNHPYNQMNAGA
Ga0335031_0000505_16616_16780	F020909	GGAG	MITKRGKRVRAVAIAVGLIVIWQVASNLWWVGIDAPSAEFLGWCWGSMNECVVL
Ga0335031_0000505_22714_22899	F000368	GGAG	MEQFKQITLSWFRAAAAAAIALYLAGETDLKTLGMAALAGAAGPVLKWLDSSAVEFGKGS
Ga0335031_0000505_24965_26095	F077306	GGAG	MSAFDGITSPAIAVQFLKSGTWTSVTTTDVIEIDIRRGRTRQSERDQAGISVVVFNNTSGYYNPDNTSGGNPWVVGGQSILRDGLQMRIVATIGGTSYNLYYGFLEETQVNLDIVSSVTMTFVDGIAYIADAQAPALATAGFAETAATRVGRMLDIVSWPSGGSRSLTGTVGMLATVQNRSCMELIYQAVDSIAGRFYISRSGVATLVPLADKFSRPTQLLFTDTQASNTVGYMQLLTNPGTYFVVNQAVINRGNANKQYTSQYNPSVSAYGIAKTVIDAPVATDSNAQNLALYESRKLAEPLTYVERIDFNVLALATRGALYPDFLATELGDQVSVVRSSQQWNLVVEGMAHRITQNNWLCSYTTSAINPYSITI