Scaffold Ga0335031

Basic Information
Taxon OID	3300034104 Open in IMG/M
Scaffold ID	Ga0335031_0000365 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034104 Open in IMG/M

Scaffold ID

Ga0335031_0000365 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35902
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (12.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

35902

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (12.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F042157	Metagenome	158	N
F044325	Metagenome	154	Y
F049410	Metagenome	146	N
F068425	Metagenome	124	Y
F082106	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0000365_1680_2096	F041191	N/A	MKLLYKPTNLSCEFIISDFAKSEGVQKVIGFSRGWHHYNSIRLGIRKEENYCVLYFYAYIKGQRIIQRIGRYQIGELVKVRLHWGYYIECKANDGYAFRVAPKCSFPIGYMLYPYAEKDGVEGVEVPIDIKIINLKIS
Ga0335031_0000365_2519_2704	F049410	GGA	MTRGTRYTNGKEVITFVKIDFIVIGGRKIDHVYFRRKDKNDLIMPLLEWNIKGKFEWEII
Ga0335031_0000365_27946_28413	F082106	N/A	MNQAFWNTLPIERFNLNKKKVVKKRKAELTTNHLDLPVNNVIQPKETKDAFNTNKFTDLIIAYLKAVHSCNSARRISSEGRYRKGIGYIAGLNKGMEDIQCILKGRLFAIEVKSQTDRMGEAQLKRKAAIEADGGHYIVATSFEQLQTELLSILK
Ga0335031_0000365_2941_3195	F042157	N/A	MNLKQKYRSPDNRQLKKIADYLIYVLLPFIQTSLALAESQGLISLRQAFWGGLAATFLLINTKFLTKFTTETPTKTAVIDGDGC
Ga0335031_0000365_3179_3772	F068425	N/A	MGMGAKKNNMKTQHQLITFAVLCLLLIIGLNHCAKDNPKPIPFDYKSEAELMKKQFGIEQAILLNQLESVNRRLQVANNAKDSIRQREISLSNTNIALMKKLRTTLPKECDTVFVLCDEIINVKDSSYAALFTAFQLCADGSTIKDSLITAYKAENITDSTLLVISKQETKQQRKGKVAAWCVGGAMFLVWLVVGLK
Ga0335031_0000365_449_616	F044325	N/A	MKALIQKLLFGYRNNPAAYTPKGGAKLTYKGGNAEAIHSALVLMQYQIKHAKGIN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335031_0000365

Overview

Ecosystem & Geography

Associated Families

Sequences