Scaffold Ga0335031

Basic Information
Taxon OID	3300034104 Open in IMG/M
Scaffold ID	Ga0335031_0000349 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034104 Open in IMG/M

Scaffold ID

Ga0335031_0000349 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36817
Total Scaffold Genes	78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (14.10%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

36817

Total Scaffold Genes

78 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (14.10%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014975	Metagenome / Metatranscriptome	258	Y
F015337	Metagenome / Metatranscriptome	255	Y
F021980	Metagenome / Metatranscriptome	216	Y
F024553	Metagenome / Metatranscriptome	205	Y
F051118	Metagenome	144	Y
F055726	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0000349_27415_27627	F055726	N/A	MSWFEDWEYPNDHIYAIERQHDIEVSWQQWEEEQESKKRLPAIIKVLTPITTNEAQYNTRKVRRAHQEKL
Ga0335031_0000349_31965_32321	F024553	N/A	MAKLNKEIQEVIDNASSVLYREEIYINSRHEYDYHKLEAAPNITVHTLYFSDDEEWTDNLKKQVAMQLVDNGNGIEIIGINAKKHLDYLEAEQLHILLRLASSHSVYQIAEPTPKKDF
Ga0335031_0000349_34623_34742	F021980	N/A	MNKFECSECGTKYSSPELTPPPGIKWSDGHVCTPKPVKS
Ga0335031_0000349_34986_35132	F015337	N/A	MKTIELSPVEFWQFRKLAFAMCIAFVCTMAQGVYIVEANIDQLEQLGY
Ga0335031_0000349_8667_8876	F014975	N/A	MLVIHEKYQGHVCGYTDNHIILAVETKDDKNFWRKLQNPYIMEEYKDIKYRYIFEDERELIKQFNGRKT
Ga0335031_0000349_9688_9885	F051118	N/A	MCNREVLEVIVEEVGSEKAAEFCKLVSLMYDIKYNACKTEEPLTEFDYEREWWALAGMELNNKIK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335031_0000349

Overview

Ecosystem & Geography

Associated Families

Sequences