Scaffold Ga0335031_0000300

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0000300
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39582
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (84.38%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001531	Metagenome / Metatranscriptome	676	Y
F008808	Metagenome	327	Y
F012001	Metagenome / Metatranscriptome	284	Y
F018684	Metagenome / Metatranscriptome	233	Y
F026858	Metagenome / Metatranscriptome	196	Y
F032271	Metagenome	180	Y
F091587	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0000300_14477_14686	F032271	GGAG	MTKPTIRIHDLATNKIVDREMTDAEFTAYEANQAAQAQAEAESQARATAKAALLVQLGITEEQAKLLLS
Ga0335031_0000300_1535_2236	F001531	AGAAGG	MNWQQIEPWEYVITSVASEYHRKFDMVELEDIKQSLYEWFAKHPHKVNEWEKIGNKDAKNLIYRSLRNHALDYCQRWKAKSVGYDVSDVYYYEADIVEALLPPVLRCEWGVTHKLNLGRPGRPSAPSEGGNLSVMMMEIDSAYWKLSKEDRKILFFRYAESMDYKDISNYLSLGSDDAARMRGNRAIKRLVNKLGGFKPFNDVDFKEPTETDTSEDSSYQELGIESEQESQEK
Ga0335031_0000300_3013_3354	F008808	AGAAG	MKNEEINPCPACGEEFDNVFDATDHLLEEEEAFDPALILPNGYRLMIGSLLRCMYRYAHEPSQIETITQDTYMTLFMAEMQPDSIVDVIEDMIVGSSMVGIDEELKQLLKDGE
Ga0335031_0000300_35724_36026	F091587	AGGA	MSYNPYGGGSGSIVVTPRKVHASDRRLGTVGARLTNTKHGKAVRLKRTRHAVTTNRPKVERVLPTLDEATQERLARALALAERERDFRATLPSVHIDAND
Ga0335031_0000300_36351_36539	F026858	AGG	MTHDNLLLDLTQREVEVIRGALRLQEDNHKRNDFPALVVETQELRSKIADAIIDNAKELTKA
Ga0335031_0000300_5928_6344	F018684	AGGA	MEEWKLQVSYKTPAGDMINIRANTADELSVLLEGVGDYSSQIAAVQRLVVGAYNVAPLGTQPSTQGTAQSTSSVPPQAQAPLFTQPPSAITPSGIASPTCVHGARIFRQGVSTKTGKPYAFWACPTPQGTPNQCKPVN
Ga0335031_0000300_7549_7740	F012001	AGGAG	MFDKKKLQAIAGSYVRAAAASVVALYTAGQTDPKVLASAFLAGLIGPILKALDKSEPQFGLKA