Scaffold Ga0335031

Basic Information
Taxon OID	3300034104 Open in IMG/M
Scaffold ID	Ga0335031_0000254 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034104 Open in IMG/M

Scaffold ID

Ga0335031_0000254 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	43211
Total Scaffold Genes	71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (54.93%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

43211

Total Scaffold Genes

71 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (54.93%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006785	Metagenome / Metatranscriptome	364	Y
F009141	Metagenome / Metatranscriptome	322	Y
F017122	Metagenome / Metatranscriptome	242	Y
F022190	Metagenome / Metatranscriptome	215	Y
F043896	Metagenome / Metatranscriptome	155	Y
F067680	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0000254_13554_13727	F043896	GGAGG	VSKPQIADWARQSWGEVIVDQNRVDLLDKLYFWDGRDKKDHPLHSTYTGLYQKYTAN
Ga0335031_0000254_13705_14031	F017122	N/A	MEVVPFQQQQDPELRLGEGRSRTSSEKAQLFELKIWLPGQGAMRDLVRAESLQQAISFATNRYPNCKVEVPEPAAKKPKLVRSSRGPKERARQNLKLVEAKREQAADR
Ga0335031_0000254_19276_19533	F009141	N/A	MTETAMVPFYRSYLLGGKMVYLDKLSELSDSELNMLNIETMASLEEARRDYEAVENKQSEEGGSVYRRLKVAGYFQAAIKLELQN
Ga0335031_0000254_20208_20465	F022190	AGGAGG	MSQVQSIEELRFEGDHLVVDAIVDDMVVRYAQTAFEPAEWGPALCRGTLYFSDEDLIPATDAELRAMLTDRVDDWTPLDTSDWDD
Ga0335031_0000254_26833_27204	F006785	GGA	MEREQLRLEKRQLRDLRWAVERSSLAASDWADLLALQAAHGKEGPLQLWRELVPYWRACQRCNGGADISPELFPQATGIFSRNDQPAKAPANRTRSSKGAARKVRSDAGVAQPSRKVRRSASP
Ga0335031_0000254_31158_31358	F067680	N/A	MAIQTITGHCIHIDIDGEEGITHATFTFKTPSIPETLGGFITMLAHGIEILVPLPDPDDEELEDDE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335031_0000254

Overview

Ecosystem & Geography

Associated Families

Sequences