NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335030_0172261

Scaffold Ga0335030_0172261


Overview

Basic Information
Taxon OID3300034103 Open in IMG/M
Scaffold IDGa0335030_0172261 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1526
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026501Metagenome / Metatranscriptome197Y
F085210Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0335030_0172261_1197_1469F026501N/AMDQSGVSNSIYFLNEDVMQWGSLRDLGPNNEVFSNADASLDQFLMEGTLIVRNPAGVGLLNNISTTGASVTGPRTATFVSRTNEGGGDSY
Ga0335030_0172261_3_515F085210GGAMSFQISSADSLVEFLKDFTGSSDDAEIKKCIYMAELSMRNIELPALRSDPYAPENIGVADSQGRIPIPADMNKPILFFKQGQPGGYDSSPTGPWIVYDRIGDRDIITQGMIAQLYLSPVNVPAVIRGKFSEVYNEYQFLPWIGEGALINLYYYKAWPLLFSPADDTLISTT

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