Scaffold Ga0335030_0046311

Overview

Basic Information

• Taxon OID: 3300034103
• Scaffold ID: Ga0335030_0046311
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3274
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046912	Metagenome	150	Y
F049494	Metagenome / Metatranscriptome	146	N
F104750	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335030_0046311_1315_1494	F046912	GAG	MRKLSEYQIDWGRLAKYNIVVNTTPRNPLDDVVRNDELVSWMKEYPDAMDAINKIKDKK
Ga0335030_0046311_548_706	F049494	N/A	METFIISLQVAMVFLMWKWSGEAFEQGLNHMGWLYIVASAGNAASVAVAIGL
Ga0335030_0046311_714_953	F104750	AGG	MNTKLQKILADAKIGKAEFDAGSYYVCSEGTLETIIKSVVDLCAEEARRYTFRSNGVSEDYNGTTNVEIEIRKLYESSN