Scaffold Ga0335030_0043088

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335030_0043088

Scaffold Ga0335030_0043088

Overview

Basic Information
Taxon OID	3300034103 Open in IMG/M
Scaffold ID	Ga0335030_0043088 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3410
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037206	Metagenome	168	Y
F045069	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335030_0043088_1559_1837	F045069	AGGAG	MRYLLLLLAAPAIAAPPDYLTYTNDISVQTVLTQDRPSWCHGMKMAFDIDGLNRAYYGCWAASQGFVHIEMLDGSKRIIPISRFTKPKEDAK
Ga0335030_0043088_2536_2781	F037206	GAGG	MKCQHCGSKTHVVNTAQQPGGIRRQRRCPSCKNNAYSAEVWVAGNVMVRKSIYTKDEAALIKKKVVDVRRANEDRRKDNAT

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