Scaffold Ga0335030_0028341

Overview

Basic Information

• Taxon OID: 3300034103
• Scaffold ID: Ga0335030_0028341
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4280
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002707	Metagenome	535	Y
F017789	Metagenome	238	Y
F072096	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335030_0028341_1181_1441	F017789	AGG	MKPDYSWKYLVCSMAITDLADLEMNGSIPDDWKFTFKKGSTLYDEVGSAWRERSENTVYLCHKNAPDSKQRWVHPDTMIDVYKVSL
Ga0335030_0028341_2408_2638	F072096	AGG	MSNYTMTNQDIQTLAENALHEACRHIQDALGIQSGDTASLFFTGAREEVVLDILTAYIDTELMLKDLSNATKDSND
Ga0335030_0028341_2868_3038	F002707	GGAG	MTQSQALTKALILALIAPDDHKAQRASELAEEIARGLSVDQVEDCKAQALELVEAS