Scaffold Ga0335030_0027770

Overview

Basic Information

• Taxon OID: 3300034103
• Scaffold ID: Ga0335030_0027770
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4327
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037206	Metagenome	168	Y
F045069	Metagenome	153	N
F081291	Metagenome / Metatranscriptome	114	Y
F102853	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335030_0027770_1124_1369	F037206	GAGG	MKCQHCGTKTHVVNTTQQPGGIRRQRKCNSCKINAYTAEVWVAGNVMVGKSIYTKDEVALIKKKGVDARRANEDRRKKDAA
Ga0335030_0027770_1571_1759	F102853	AGAAG	MKNIVYAYYVAVALAVPAFLLFFAEPQTRPTAAECGVAEIAPDMSTRDREVCRQLRQHRHRM
Ga0335030_0027770_165_443	F045069	GGAGG	MRYLLLLLAAPALAAEPNYLTYTNDISVQTVLTQDRPNWCHGMKMAFDIDGLQRAYYGCWAVSQGFVHIEMLDGSKRIIPMSRFTKPKEEAK
Ga0335030_0027770_573_746	F081291	GGAGG	VKRIDYWKAKLPGARAEERIRQKELNQMARAFERAVEKVAEIEQRIEDEKDKLAKTK