Scaffold Ga0335030_0010526

Overview

Basic Information

• Taxon OID: 3300034103
• Scaffold ID: Ga0335030_0010526
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7085
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008936	Metagenome	325	Y
F034061	Metagenome	175	N
F039498	Metagenome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335030_0010526_363_1376	F034061	N/A	MCYDKLLGLKGCDRAEPTTGLYIDDLGINQTLLGQLITNQYKSGVELFDAKLAFAWRKMSSDMLSRLSPMMKADTVIDSKRIGQVLTNASNIDLALGAGKYAGIRVTIDPNQLSFLNFYLSSLQIDIYTMSTPVPILVFDMTTQKLVGTFNYQSEAVEEFIGRTFKANRRKLDLAFVYESLYDTTKMITKKGSCYDCGGGIRAVHICPFVDAIGIELTTDGTSVLTSKSKKYTQGMSMVYNVNCDREAWLCSIGGLMAMPLAYATAVEIYDYSLTIAPTIRVNTTVSVTNENIIEARNIAATRYNEELAAMLQNMRLPDDNNCFDCRKNMKYVTALP
Ga0335030_0010526_4582_5490	F008936	N/A	MASFEELVKSKIKLLENVPEEIATAAIKAQRDAWRKIAPMLAEMDVDADGNIAQTEDNIRRIGLITDELNKSLAGGEYKDAVQKFLGSIDEGVQLTDDIAKKIDSSFEPNNVQKQLLNISKQNAIDAFFGSGLKQNVTQPFLEQLTANVSARAPLNQAVKALQGVIEGTGTTDGRLLANVRTTAGTAQAIADRSYAAAVNEELGIEYFQYLGGEIATTRPFCEHREGQIFHRKEIEAWGNGDNSAGINDIREGTWAGRIEGTDSRSIFTFVGGWNCRHYLVPVIANRVPADVKARAKAEGYT
Ga0335030_0010526_5477_7072	F039498	N/A	VFEDFRATISRAFADQNWSIRYNGEVDPRFGEETFQQYVNNEIEKFGSLEMFIKNMLPTLKLVDANGIIAIFPEDIYTNEDGTITNDLIKPMPEYYNCKNIVGQEFDKYYLVITDDYSVVKAGSKTEKSGIILELYDKEAIYRIEQVGKKSDMTFGEPYVVFQHNLGYVPAIKLMGAPQLIGDEIAFQSPFITAVPLLDQVILDESYLQMSKATSAFPFMVALGEICEFTDREGNRCNDGQIFDPINGGYRTCGSCSGSGVKSRFSPTGMLLIKPKTSISEGDTGLSGEYLKFVSPPMETLNFLRTEIEQQMAKSRRILHLPSSDESGTIGEASTATGSLNKLRSLYAFIKPISDQLFTIYEFCLVTMGRMRYGDLFGGVNLVYPTSFDISTPSDYLAVISEGVKAGVPPSITFSNVYNYIRAIHYTDDETSAIYDLIINADELLLMSNADVLARLASGTVEKWQDVLHNSAPQLIMELIRDFIPSEGQTSFLALPMSDKIRLLQEKAAEKIRVQLDPIQQAQQTLLNGIV