Scaffold Ga0335030_0004259

Overview

Basic Information

• Taxon OID: 3300034103
• Scaffold ID: Ga0335030_0004259
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11122
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006988	Metagenome	360	Y
F037735	Metagenome	167	N
F063702	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335030_0004259_5732_5908	F063702	AGG	MKYTIISERIGTVGAEFVPGAGTNIEALLAHGFIKSDEVPSDSRAPKSAKTKAHTKKD
Ga0335030_0004259_5911_6270	F037735	N/A	MTVYTDLFNEAIDDLATTLATITGLRVVFDPEKINPPCVFIDAPSFDAFNYNIVTMNFSVKVVTLGPGNLDGLRNVLSMCAQVLAKNVAVKSGRPGYIPVGGQTFAAYDLSIDMQAQTG
Ga0335030_0004259_81_551	F006988	AGGA	MTIRPYTGNKDAVHAQKREGTKVFVDYCCYLFGVTNIGIFNDRNMVGTTPPKKSVHATWRAVDLKGTEAQRIKLIDFLYTHRDILCIEEIHDYAGTYKNNPKGWGAGYRCDRDAWRVYDKNTIGSKGAQWVHVEVAPLLADHPDVVHHAFKTIMGT