NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335030_0003480

Scaffold Ga0335030_0003480


Overview

Basic Information
Taxon OID3300034103 Open in IMG/M
Scaffold IDGa0335030_0003480 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12276
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (69.70%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000441Metagenome / Metatranscriptome1136Y
F023344Metagenome / Metatranscriptome210Y
F038246Metagenome166Y
F047059Metagenome / Metatranscriptome150Y
F060917Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0335030_0003480_10194_10337F000441AGGAGGMKMSDKYLNDQLSKAQKLLWGGSETENIEAHNIISKLIKDKIEQVEL
Ga0335030_0003480_10894_11070F047059GGAMKIHLISLNQDLEDARNNVPLNEDEYFESDAYYTGAIDTMEHILSVANDIMINNERVY
Ga0335030_0003480_11391_11603F023344AGGCGGMEAFTDTVGEHILGAIQVDIEQALFEDWNNANLEEGEAFAEYKFMQFAPDNLKQSYNEYYGYIEGDEFCL
Ga0335030_0003480_4847_5110F060917N/AMIEWLARRIFSWTSLREYIFDEVHLYDHLDSIMSDPERMKTGSLSWMEGDMWYGWTYDSNAKRYYFDDIGNKSLIGLWEDQFLSKAN
Ga0335030_0003480_7892_8062F038246AGGAMAILDNLEAYLEKAGDEEKCYYCQNIAKYTDVAHKDHNNYVVVGVCECHAYKGLVS
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