Scaffold Ga0335030_0003119

Overview

Basic Information

• Taxon OID: 3300034103
• Scaffold ID: Ga0335030_0003119
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13014
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (26.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062767	Metagenome	130	N
F067748	Metagenome	125	N
F082706	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335030_0003119_10047_12011	F082706	N/A	MEELIGILLSKLLDREIREGRHDYIVEAREKAEELEYHFENEYPDKLLHTQHPSEEPWMKEYRRRRWQAPTTTATGRVFTFLQKIQQADDFKITFESDFKKTGIAERIGLMDNTLKHYVEYELPKTGSLEKWLFNVFLKTYLKDSNAVVITMPDYEDFIENPSGTTTLDWSKPYPHIIESEYLIWEGEDYIITKTEDYKDMNRKKWDQFLCFTTEGLILFRQVNEYTYEQPFQIFILPYQFGYLPACKVGNIIYEEEDGQLVYDSVLAPCLPAWNEVLFRTDDLNILWATHALPQKWALKMSPCKTCNGTGIRTNRKEEKIGCNDCQGSGRASSSPFGLMEINIDRVSAVNPTPLVPPVPPAGYIERPTETVKLFQEDILQKEFQGFKAIGLELLGQIPAAQSGIAKEYDRKELNTFCFSVTVHLAQVYRKVCFYIMLQRYNALFASSLMDSDKIQAALPQITVPTDYDVMTADMVAEQLKKAVDSKFNPLITSGIEMDYVEKLYGENSIQKTYLKLLSSLDPLPFKSTDEKTVLLASNGCSQLDYILSANLAAFITLKVEEDATWYDKPFNVQKAEVYALAAEKQMQIKSGLVPLMDDVQDTSSPADEADNLGKLPLAIQQLSLAAERANKAGNAKLFKVLNDKINNLLSEIG
Ga0335030_0003119_2138_2623	F062767	N/A	MIVTKVTVESALKNLCENLAGTFVNNMLNYGEAVESIVEGSAGNYVTKDGQTYCAVNDTYPLVVFLVREGASVETTPAGGRANSLLRTVNLKLVANSTFENAEFGITSIINRTKGITYAGTDFNSKAIANQYFGLAERNFETYFFSIDFTVTERISCEVAC
Ga0335030_0003119_5984_7018	F067748	N/A	MNCLQNYIGLKGCTAGEPLSGIYINDYPGMSSELLDKIATPEQASYVGMWNSAQSVSYIRIKRDIQAALFTSAEAQLDQVLFQTSKEFVQQWQQITTVPAEAILKGAFVSVQGSKYLALRVKQIYVYNAGAPVAGVPWYIYQTQDGKLLDSGTADLISGMNYIPVNNEFYSDFDKINMMVAIDCTNVPTTSGFFIDWGWNQMDLECATRFTYLWRNGWSIFPVTAPLGYGFGDSWNQDNSQSGVYIDAQLLCSLDSFICQQQEFLIDAWANLLCYQILWQKVASPRANYFAQGNREFTERAMATFLDGYQQSLAIWARQLNLRGEGLCFNCDNAGLIQQGFVRP