Scaffold Ga0335030_0002140

Overview

Basic Information

• Taxon OID: 3300034103
• Scaffold ID: Ga0335030_0002140
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15856
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081046	Metagenome	114	N
F086811	Metagenome	110	N
F093506	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335030_0002140_138_800	F093506	N/A	MATTIISNISSFDYEPDITTDNGRDGITAFQFSVVGSFSALNSNFSLDQVLVGVPDQPPGNFRVVRRNMSHIAGDTSDGLYRLQVSAEGGTGDNSLYILETSYQYQREIVSGFVQTVAQDIAINYICEWLSPTVTITTNSQTEDVTAVQDRVRGFVASQQVQIIRNKPRTTALIGTVQYPVFGPGIDVNAINIIGSSVETAGGLFRVRASATKGQMQLSL
Ga0335030_0002140_7727_8215	F086811	N/A	MISPQFKIEDALAAILTPISGLNVFTSNRRGARLFPYVTIQASLGAQQIIPYSGVFEVSVDIAYSDSATLTSQANFDATYFNIFQRLYPDNNTLVNKVQDKVTDLKIFMGRITSQSPTIRADKRAWQRGLTLSFIVTPDENAGGLREYDFSDAFNSFYLGTI
Ga0335030_0002140_8959_9630	F081046	GAG	MTAKTIKYSQRLGDIIRCLPACKYLADQGHEVFVDCLPQYHGIFEMVSYAKVGNKGDVIDLEIWPNKYQEYRFSNKTWTEFIYAHPAINKADPTSILFDKLDDKPAKGLPAEYNMVAPFGISQGHKRDPLQIIVEARKKCGEKNFFVLCPPGMEIKGLPTYTAPSIPEMAKAIRGASEFWSIDSGQMAIAAGVRKESRVVYFPQTNEPFDKDNIFIWDSVELN