Scaffold Ga0335030_0000585

Overview

Basic Information

• Taxon OID: 3300034103
• Scaffold ID: Ga0335030_0000585
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33765
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (77.78%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048854	Metagenome	147	Y
F050233	Metagenome / Metatranscriptome	145	Y
F053996	Metagenome	140	Y
F057212	Metagenome	136	Y
F074591	Metagenome / Metatranscriptome	119	Y
F086842	Metagenome	110	Y
F095177	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335030_0000585_12310_12531	F095177	AGGTGG	MGFVPYGMEYATLDDKHKIRKMLEYLGITHPAQQMEFMSALLGKPFDTTKMSRQDFITLRSKIKNIQQTKDKA
Ga0335030_0000585_12531_12653	F074591	AGG	MTNWNWTPRARFIGELLTALAVIGAGWVLFVGTWFALGGN
Ga0335030_0000585_13530_13871	F086842	GAGG	MNKAEIGKVLAVAMAIDARLSAADEAGFRAKVEGWSLALSATMEFEFARDAVGKHYATSTASVMPAHLNAMWSSHRNRQNEIDNVRAIGSSPKSQGMPEAIRQQLKGFGLIND
Ga0335030_0000585_15447_15713	F053996	N/A	MADHKLFANHDAVTPVDWAKVWEVIDNIDEPEFDEHQLVIVAVLEFLCGSEMVEVSLDEIANLPQIERQAVAEALRLKWSKVEFQENL
Ga0335030_0000585_15749_15907	F048854	AGGAG	MADEQKENKDNMIALRLNSEQMLAVRQWAHQHNANVSQVIRSAIELMTGAKQ
Ga0335030_0000585_19302_19580	F050233	N/A	MGLIELGQYAGALTAIAVLFGMFIKWAIVKPIKAYIDTATYALHPDANGGKSLADVARTVNRIESNVKDLDYRLNSIEELVTKPTRAKKSAS
Ga0335030_0000585_6951_7505	F057212	AGAAGG	VTTIVTTTGNNFCTLTADQGITSDLIHPDMPKIIQQDTWLIGVAGSARLCDQLQYAIEYPKPPVEVVKSGDWLKWIVTKVVPLIDDTIKDKEMDAEALLVTHGKSFLIGEDLSVLTAAPYWAIGSGADLAIGSLADKQYLPDWNKNHDLSAKRAIEAASMFDPNTRGTVDQYRSYGNGKVMRGV