NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335030_0000495

Scaffold Ga0335030_0000495


Overview

Basic Information
Taxon OID3300034103 Open in IMG/M
Scaffold IDGa0335030_0000495 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37221
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (78.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F002085Metagenome / Metatranscriptome595Y
F002997Metagenome / Metatranscriptome514Y
F092060Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0335030_0000495_25308_25913F002085GGAGVNVITPVEGTSNIRIADFLRITTVGGTYLMTTAPANLTVSAVDANPFQSVGTLLSIGDIQRDIKSTANDTTITLSGIDTSMLGFVLGQNVKGSPIQLWHGFFDTNGALITTGGTGGLYQYFNGIITSFAISEQWMDEARMYLGTISVSASSIQLILQNRIAGRYTNNSSWQFYNSNDTSMNRVPFIETINYQFGKDAAPNS
Ga0335030_0000495_25910_26590F000934GAGMSLQTILSICESVGINDQRFVGQTLSRNQKLTTSEILTVVPFQFELRPMNYLLYSQNRTTLNSLRIPDKSLQQYLNFGQTGWLNYVKYQGQMTGVQIGNCLWQVSSANKVLVLGALPALASTDYLFRVGDFVQVGLYSYIVTADVQRGVGSTVNVPVHRNLISALVSTVSCVAGEFGTTVAMGGTTYTGVTFPVVLREYPTYNLVPTANDSFISWSGPFKALEQVL
Ga0335030_0000495_31434_31778F002997N/AMTIRRYENIDINTLTFGKSTFGEQTTAQTKWFTTRAEVSDVANSLRISERYRLYQDLITLRIRYTPNAKTIVNDQNAYSVRWRNHDWRITDARESNDRMSVMLICYRSDPVTAV
Ga0335030_0000495_7456_7632F092060GGAGMTLVAKQGNREIWATFDQSAQVYELFFDREGETFTGWYVDSIKDAKVAAKHIFAELTA
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