NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335030_0000463

Scaffold Ga0335030_0000463


Overview

Basic Information
Taxon OID3300034103 Open in IMG/M
Scaffold IDGa0335030_0000463 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38509
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (10.34%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028725Metagenome190Y
F055417Metagenome / Metatranscriptome138N
F057361Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0335030_0000463_2_406F055417N/ADEAIQNLITADLAVLIKDIRFSISAGSPITVDSPIGCGTPIRINEDRTATLFDANVTDENVAFWNDINSRRVAWILAYLCDSNKVIYIDPPQGITTSAQFIVPEQNNELQRFEATFSWRDKNIPLQYPTPPGVF
Ga0335030_0000463_30785_31414F028725N/AMKLLKKLIKRLYYKKSNNKILEYNLVKLFEKDGFNYYKFPKETNMPLERFAMAMALLERLSCGISGNEMESILNKMEEALSNGLSNPKNAALIAAYIHVIRERQDTVIHRDILLNIAATWIIREDEDPTIINDDIHRNKLEIFEAMCKEGSHDFFTKAHIEPLVPLLSITREEFQTLWEYNLKQIKNLKDILNRLNTHLITEARKLKAN
Ga0335030_0000463_38181_38507F057361N/AMSCVSFCSSDLPDHNLVDCGEYKLGGVSAIIIGACGTELVNPSDDEAIQNLITADLAVLIKDIRFSIAAGSPITVDSPIGCGTPIRINEDRTATLFDANVTDENVAFWN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.