Scaffold Ga0335030_0000185

Overview

Basic Information

• Taxon OID: 3300034103
• Scaffold ID: Ga0335030_0000185
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70300
• Total Scaffold Genes: 118
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (36.44%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005382	Metagenome / Metatranscriptome	402	Y
F007025	Metagenome / Metatranscriptome	359	Y
F021068	Metagenome / Metatranscriptome	220	Y
F022611	Metagenome / Metatranscriptome	213	Y
F032199	Metagenome / Metatranscriptome	180	Y
F034858	Metagenome	173	Y
F036146	Metagenome / Metatranscriptome	170	Y
F059774	Metagenome / Metatranscriptome	133	N
F069846	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335030_0000185_24876_25592	F021068	AGG	MEMADSTIYAVCIPGEKVRYTAKSRIVPIMGGSHALSQEERESLRAEGYAFDDENAMLSPLNDRWGELSCVHWMILNAKELNIGNAQYRRNWLEPEDEWYCPETLYVPEPAQFSCTLEQQFYGGHSAFDAPAITRKLADEGKWIFTREEIDKIWAQSSFVGCNMARGPRQSYLRFMTTLFVGLAPIWRENKEHFLSIEGYDKRAIAFIAERLITGMVLCRDRILPGVKIATAPIGFIN
Ga0335030_0000185_27584_28273	F034858	AGGAG	MLSPSSVRFCISTCNKFAAHTLKTIIPSLTRAGIGTNEILIINGGQENWQIDHYGDVPMICTPQNSFEYTPLIEIVEHNLMSPFWFLLHDTCIAGPAFKSLVYDPPEAFEKVAMKHTPSMSIGLYSMDYLMRHKDRLAAIKNMDSSPQALQAWKQWGVPNEDYMLWKLRDSPTGLYHPDKHGIDEWNYQGHADVYGTGMPRRIEYFPQLDLFKAKSNWQGVQPTLCIDI
Ga0335030_0000185_40402_40647	F022611	N/A	MHAQFAIRTSVVKLRTIAMFGLPERQPFNYGPYKLWPCFSKPEFQWFAAIDGAPYYFRTLNEAKLFIKDRLSMEDAENLCD
Ga0335030_0000185_44733_44891	F007025	GGAG	VILVDFFSEDCCKGTELVEGWYFYADDDEGFVGGPFASEEAALKAAFDGHGW
Ga0335030_0000185_49506_49784	F005382	N/A	MTKTDKIKSFIFNAGSSIVNVRFVKADGSVRSLCFNPRDTKEIKGTGTAVKKPSIIRCRDFTIARTAGEGAWRSFDCERVLSIKANGQTLIF
Ga0335030_0000185_51239_51403	F059774	GGAGG	MIYGEYENDPDLDWERPQRLNRQLSLQQLESRLELWKQKHEDMCLKLYRAATGI
Ga0335030_0000185_52621_52797	F036146	GAGG	MTPCRTWKITTSEGKTIALGAISAKQAEHFMLAIRPDIKIALIEEIKPLPEDVPEQLP
Ga0335030_0000185_54251_54487	F032199	AGGAG	MQNEGAIKNEYCESPKSCMAVAYRRETDEELVPAGLDAAYAEIISSFHGEMEEFVRKYCPKRLVELDALMDQAFWQYH
Ga0335030_0000185_60886_61167	F069846	GAGG	MPSGNLPVFSGTVDLTPDILNAAKKAGPNAQGNYSFRVALWNNDKRDKDTAPHFKGQVTVNKMENSPKAYSSFWQNGESAGSSFASSSSDDLF