Scaffold Ga0335030

Basic Information
Taxon OID	3300034103 Open in IMG/M
Scaffold ID	Ga0335030_0000101 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034103 Open in IMG/M

Scaffold ID

Ga0335030_0000101 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	100421
Total Scaffold Genes	132 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	92 (69.70%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

100421

Total Scaffold Genes

132 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

92 (69.70%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000264	Metagenome / Metatranscriptome	1424	Y
F010302	Metagenome / Metatranscriptome	305	N
F017265	Metagenome / Metatranscriptome	241	N
F018928	Metagenome / Metatranscriptome	232	Y
F041188	Metagenome / Metatranscriptome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335030_0000101_34117_34473	F041188	AGGAG	MSLTIEELSTKTVMALKAYAKKNNIELFEANTKLEILEILASWIPPEKTEERVEEANKVENLTNKIALYSDKNLHMDNLGALKVGYNIVSKEASEKWLTHRLVRIASPEEVASYYRKD
Ga0335030_0000101_35962_36600	F017265	AGG	MNNIVNYSLGFLEGIDRGKKIFLDNLGLGIIQSLSQYIDVQARANPKALHHVYEWNQTGSPSARLFDLRYTVSNLGLSVNSTFKQSRSISENMTIPFYNKAKIMENGIPVTISPTKSKVLKFNGPSGEVFTSRPIKVENPGGDAVYKGFESAFDEFMMRYFKQSFLRASGLYDYIKKPSLYKKNFKAGSKIGKSKGVDTGFKWITNATIGVE
Ga0335030_0000101_4074_4649	F010302	N/A	MVDVLLNTENIVVLGPPETIDVLVDIGPQGTRGSKIIVGSGEPNSQTNNGVILGQTLILNDMYINIAPGENYSYMYQYTSQPGGNAWVQVLKINPAIYSAIEIIEFVSGAGSITIPILDIVNVTGSPLTASNFNIQFKIEGTSPIAASMEIPALAGAGTNLVINFDAVQYSGGSWSALTGNKNVHLFISIV
Ga0335030_0000101_64812_64967	F000264	GGAG	MAGKLYTSEIWLRKRYLIDKKSPQDIAKECGASIETVYVYLAKFGLRKSKR
Ga0335030_0000101_84964_85173	F018928	AGGAG	MIIKSLNTMEKIVSKNKNLIWSGWDVIDLKESDIAKTSPQGIRIKDKWYLHRIYKPSRNGWDIPNKYKD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335030_0000101

Overview

Ecosystem & Geography

Associated Families

Sequences