Scaffold Ga0335030_0000028

Overview

Basic Information

• Taxon OID: 3300034103
• Scaffold ID: Ga0335030_0000028
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 189210
• Total Scaffold Genes: 286
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 203 (70.98%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F007305	Metagenome / Metatranscriptome	353	Y
F012108	Metagenome / Metatranscriptome	283	Y
F043359	Metagenome / Metatranscriptome	156	Y
F074805	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335030_0000028_48263_48721	F007305	GAG	MKIIQKTIKKAYNSWNPCKEIRCYHFAAAFDGTKLIGFTQNNPIKTHTGAYRIGENFNLPKYKEHPFYHAESHLVSQLLDRYNSIDPNWSLVVMRINRRGLVLGSKPCENCSQLLNAVGLDTIYYSTDDGDFTNSFGTLIGVGGLTMPMMMV
Ga0335030_0000028_75074_75787	F000325	GGA	MMKTANGNDKLGKENCIVVSRPVGDSCPSDCDFLGNGCYAEDLENIYPGVRPAGMQNLVTEKNSIRSMLVDAVKKNKDVRWHERGDFFKYGELDNEYVDNVLWACENILASGGSLPTMWAYTHIYDTRLSMELGKYINMYASIHDGEDMKQAKAAGFKLFAWCDSDTKIAPKRPRGKNKVAAWRSALPKLVVLEGEKFVTCPEIRRGRGVVTCTKTKNSVHCDLCVRGLANVLFPAH
Ga0335030_0000028_76347_76670	F006543	N/A	LTSDNVGCIIGLLGSITLLERFFTMKKFSFVVDVVADELDRDGVVDSIRSCLSDSLPGDVHANVKAGEVKAFSEQGYKVWRARVTGVTAEQAGDAHSGKVEKETVEA
Ga0335030_0000028_76883_77257	F012108	GGAGG	MIKVELGVREALTMISNGCSLDMFEKIVCSLEVALGVNQRCMVTITGGMNLDNRIPCIKAIRIATGWGLKEGKEWTDGMVGGWKYDRFVPATPNTKQSITLKSPELAEKLLRDLVGLGCEGFLS
Ga0335030_0000028_78219_78530	F043359	GGAG	MEWFNSHKNPPAVGQKVYYFGPNIGLFIGHYSYEERSFETYSYNEYNQKVVDKVLSICPHVFTNMSFGVCDACDAPFWLPYDEERAKSWCPIIPEEYTQGLYD
Ga0335030_0000028_81059_81502	F074805	N/A	MLRVERLFSNERVDMDNLFVIGGLLTAAVVAGFLFYAVYGGSRTSLASAVEGQVFNFTYEQPLHGTHERFLAKVIGKQTLTADQIRKLNSKSRYRANDPNFIRTNHLVTCRTFDGKVRNFYAERVTNCRKPLLAGTLFTSKVASLLF