NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335030_0000028

Scaffold Ga0335030_0000028


Overview

Basic Information
Taxon OID3300034103 Open in IMG/M
Scaffold IDGa0335030_0000028 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)189210
Total Scaffold Genes286 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)203 (70.98%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F006543Metagenome / Metatranscriptome370Y
F007305Metagenome / Metatranscriptome353Y
F012108Metagenome / Metatranscriptome283Y
F043359Metagenome / Metatranscriptome156Y
F074805Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0335030_0000028_48263_48721F007305GAGMKIIQKTIKKAYNSWNPCKEIRCYHFAAAFDGTKLIGFTQNNPIKTHTGAYRIGENFNLPKYKEHPFYHAESHLVSQLLDRYNSIDPNWSLVVMRINRRGLVLGSKPCENCSQLLNAVGLDTIYYSTDDGDFTNSFGTLIGVGGLTMPMMMV
Ga0335030_0000028_75074_75787F000325GGAMMKTANGNDKLGKENCIVVSRPVGDSCPSDCDFLGNGCYAEDLENIYPGVRPAGMQNLVTEKNSIRSMLVDAVKKNKDVRWHERGDFFKYGELDNEYVDNVLWACENILASGGSLPTMWAYTHIYDTRLSMELGKYINMYASIHDGEDMKQAKAAGFKLFAWCDSDTKIAPKRPRGKNKVAAWRSALPKLVVLEGEKFVTCPEIRRGRGVVTCTKTKNSVHCDLCVRGLANVLFPAH
Ga0335030_0000028_76347_76670F006543N/ALTSDNVGCIIGLLGSITLLERFFTMKKFSFVVDVVADELDRDGVVDSIRSCLSDSLPGDVHANVKAGEVKAFSEQGYKVWRARVTGVTAEQAGDAHSGKVEKETVEA
Ga0335030_0000028_76883_77257F012108GGAGGMIKVELGVREALTMISNGCSLDMFEKIVCSLEVALGVNQRCMVTITGGMNLDNRIPCIKAIRIATGWGLKEGKEWTDGMVGGWKYDRFVPATPNTKQSITLKSPELAEKLLRDLVGLGCEGFLS
Ga0335030_0000028_78219_78530F043359GGAGMEWFNSHKNPPAVGQKVYYFGPNIGLFIGHYSYEERSFETYSYNEYNQKVVDKVLSICPHVFTNMSFGVCDACDAPFWLPYDEERAKSWCPIIPEEYTQGLYD
Ga0335030_0000028_81059_81502F074805N/AMLRVERLFSNERVDMDNLFVIGGLLTAAVVAGFLFYAVYGGSRTSLASAVEGQVFNFTYEQPLHGTHERFLAKVIGKQTLTADQIRKLNSKSRYRANDPNFIRTNHLVTCRTFDGKVRNFYAERVTNCRKPLLAGTLFTSKVASLLF

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