Basic Information | |
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Taxon OID | 3300034103 Open in IMG/M |
Scaffold ID | Ga0335030_0000028 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 189210 |
Total Scaffold Genes | 286 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 203 (70.98%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000325 | Metagenome / Metatranscriptome | 1296 | Y |
F006543 | Metagenome / Metatranscriptome | 370 | Y |
F007305 | Metagenome / Metatranscriptome | 353 | Y |
F012108 | Metagenome / Metatranscriptome | 283 | Y |
F043359 | Metagenome / Metatranscriptome | 156 | Y |
F074805 | Metagenome / Metatranscriptome | 119 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335030_0000028_48263_48721 | F007305 | GAG | MKIIQKTIKKAYNSWNPCKEIRCYHFAAAFDGTKLIGFTQNNPIKTHTGAYRIGENFNLPKYKEHPFYHAESHLVSQLLDRYNSIDPNWSLVVMRINRRGLVLGSKPCENCSQLLNAVGLDTIYYSTDDGDFTNSFGTLIGVGGLTMPMMMV |
Ga0335030_0000028_75074_75787 | F000325 | GGA | MMKTANGNDKLGKENCIVVSRPVGDSCPSDCDFLGNGCYAEDLENIYPGVRPAGMQNLVTEKNSIRSMLVDAVKKNKDVRWHERGDFFKYGELDNEYVDNVLWACENILASGGSLPTMWAYTHIYDTRLSMELGKYINMYASIHDGEDMKQAKAAGFKLFAWCDSDTKIAPKRPRGKNKVAAWRSALPKLVVLEGEKFVTCPEIRRGRGVVTCTKTKNSVHCDLCVRGLANVLFPAH |
Ga0335030_0000028_76347_76670 | F006543 | N/A | LTSDNVGCIIGLLGSITLLERFFTMKKFSFVVDVVADELDRDGVVDSIRSCLSDSLPGDVHANVKAGEVKAFSEQGYKVWRARVTGVTAEQAGDAHSGKVEKETVEA |
Ga0335030_0000028_76883_77257 | F012108 | GGAGG | MIKVELGVREALTMISNGCSLDMFEKIVCSLEVALGVNQRCMVTITGGMNLDNRIPCIKAIRIATGWGLKEGKEWTDGMVGGWKYDRFVPATPNTKQSITLKSPELAEKLLRDLVGLGCEGFLS |
Ga0335030_0000028_78219_78530 | F043359 | GGAG | MEWFNSHKNPPAVGQKVYYFGPNIGLFIGHYSYEERSFETYSYNEYNQKVVDKVLSICPHVFTNMSFGVCDACDAPFWLPYDEERAKSWCPIIPEEYTQGLYD |
Ga0335030_0000028_81059_81502 | F074805 | N/A | MLRVERLFSNERVDMDNLFVIGGLLTAAVVAGFLFYAVYGGSRTSLASAVEGQVFNFTYEQPLHGTHERFLAKVIGKQTLTADQIRKLNSKSRYRANDPNFIRTNHLVTCRTFDGKVRNFYAERVTNCRKPLLAGTLFTSKVASLLF |
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