NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0253318

Scaffold Ga0335029_0253318


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0253318 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1137
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041191Metagenome160Y
F062749Metagenome130Y
F102493Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0253318_2_370F041191GGTGGMDEKMKLLYKPIKLTCEFIVPDIEKSDGVQKVIGFSRGWHHWNSIRLGIRKEENYCVLYFYAYIKGKRIVQRISRYYIGELVKCELHWGYYIECKANDGYAFRVAPKRSFPIGYQLYSYAEKD
Ga0335029_0253318_355_546F062749N/AMKTKSSLILWAVAALFMSFWAVKFAMTGVFFGNSELLTFTLSFCASLTSAVCGAGWMQQWMKK
Ga0335029_0253318_550_723F102493N/AMTTTLTLTLHFDYENDDRENNIKGGWVLTDITNGKTSVHLSPKLEQLLNEELDPENF

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