NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0103773

Scaffold Ga0335029_0103773


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0103773 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2003
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014606Metagenome261Y
F026503Metagenome197N

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0103773_191_994F026503GAGGMIQIETSFHRLEYQLARLALAAKVDLGLVIKEEAKYAIQTIVKFTPPKTKQQGVNAVRGDFSRLAQPLVYSDLKAKATKGGFYGSMAKYVRNRDVEKMRALLRNPKLTGYYGMKLLENEDALRNEHKARRNARGRITGKATALAFGADFKKYRNEIEGRVGWTVSGWNSSAKVSGARYKKFSDRLKPQGGLKGRLFGYVSSSFGERPFIKATASHVKIPNYQRMVDGAINSRERTTIKKINAVLANRAVNLGFTKVNGAMPLLIAAA
Ga0335029_0103773_991_1422F014606N/AMSTRTNIRNATATALTSALVVPTANILRGRNNTIASVSFPSAAIYAVTEQIEVRTLGPSNRTQYRQLQLVVDYFTAESGTYMIDDLFDTGSAAVEAAVLTDVTLGGACQDLHLTNVEYVIEPDEERRWGTARHTFNAIYLTTD
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