Scaffold Ga0335029_0093531

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0093531
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2132
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017998	Metagenome	237	Y
F018001	Metagenome	237	Y
F037728	Metagenome	167	Y
F084228	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0093531_1280_1615	F084228	N/A	MLTIQNVTKLAGKSIFGGWVVRDMNCHPTQNKYMFDIHCMGPLGNTIDRCTVSLNRIGQLQRTMGKPDELAYFLNYNGEQTDVCVTKDWIKNPYNFISQLKYIINTYHNKQ
Ga0335029_0093531_1617_1958	F018001	N/A	MLTIKNIEYLKGQELNDWKVLDAGQDLRAQLGKNIYLLTFARLDKGVMQDDRAGVIIDRNINPLLKGYHIKIVYEDWSYEIHSTVWPAINIRDKDAFLGMVLNKINDEYYKRK
Ga0335029_0093531_353_718	F037728	N/A	MKRLNITNFSKRVMEIYSDYFMIKHCTYSEDRYIIGIVVNDVVSYKPLESGKHYKMAIDKAPNEDGNYHIWLWDMGLNISYPMSITPDALSSLSLFTSFLNHTLKLANEGSFSGDTGNKI
Ga0335029_0093531_745_984	F017998	N/A	MNLERLDLEKYEVLERERNNTIADPLYQQWMSELKVSSSYTDREGIIRANELNNQYTYSVLAGNKSTKFSVSSILSILK