Scaffold Ga0335029_0087620

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0087620
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2216
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011392	Metagenome / Metatranscriptome	291	Y
F047046	Metagenome / Metatranscriptome	150	Y
F070108	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0087620_2102_2215	F070108	N/A	MLFSLEEQLDIELILEEANAYGLRVEVEEYAQRYLSEG
Ga0335029_0087620_536_796	F047046	N/A	VVKIKIKNMNIMTIIAPKTQRDDLKSVIGKEVSENHSPTCRGKLIKVNKTTCTFEVVKSPYRSGDESRVGERYLVPISWAWNAFFF
Ga0335029_0087620_816_1361	F011392	N/A	MNLSIKELNELIYSLGITYHNGNFVNKDLNESLLEKLYSELNSKIAEEAIDEEIESDTYYVSNEEADEDYRISMMQDEQRYESSVSKDYDNHLKNLRERGYVTQVLLDYVDLKGAVTHKELERYYKQITGSNSFSHILQNLVIPYKNRKTQRYLAKEGKPYSDAKYIVKLANPSNWVVVN