NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0085955

Scaffold Ga0335029_0085955


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0085955 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2242
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F000903Metagenome / Metatranscriptome843Y
F001897Metagenome / Metatranscriptome620Y
F009883Metagenome / Metatranscriptome311Y

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0085955_1121_1330F000403N/AMGATSMSDYVEIIYPQEMKARLMCNGEIVEEYKIEQCDKCSQLRRLDYFGYQKGYDKQDNIIWFCGDCR
Ga0335029_0085955_1312_1932F001897GGAMMASFMDGYEGNKERTDRWIATFPQGRLESHIIEFNAEKGYVLVQAKAFRNQTEIDPAGIDYAYGYLAAYPDKMKRWMIEDTCTSALMRVMALVMGNTEKATKEVMALVKSEAPAADYDYWTTKHGEVPSYQTAAEAEQAGTPSFGSSEESPAAPECRHGSMRWNQSKPEAPKSWGGYFCTEKTKENQCTPRWYVLRSTGKWEPQV
Ga0335029_0085955_1929_2087F009883GGAGMDELSIVVMCLIAGAFWAVMSYSVGFKEGERQGYTRGRAVARHAVSAERKAK
Ga0335029_0085955_645_1124F000903N/AMIDRIEEVQCMIAAIQHCHDRSADHSSRIVKNLSWFEYVAQIGESMAAELVVAKRLGYDYTPGITWDKSKADVGEHIEVKWSANPASNLWIQESDRHDRDIAVLVTGNSPKMHIVGWMPVAVAKKPRYRNASQNNWSVPQINLQPIETLARSNYAHPSI
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