Scaffold Ga0335029_0084681

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0084681
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2262
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001460	Metagenome / Metatranscriptome	690	Y
F002387	Metagenome / Metatranscriptome	565	Y
F007644	Metagenome / Metatranscriptome	347	Y
F009685	Metagenome / Metatranscriptome	314	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0084681_1197_1382	F001460	GAGG	MLGYEMADLNEMINAVHDAKLFYIRTPSDLIDKEPLVKSLEKTNDFLQGLWAEGYFDGYQ
Ga0335029_0084681_1399_1557	F007644	AGTAG	MKLHLISLEQDLEENPASIHVVDIEGQIYATKHLLSVATDIMNESNERYINE
Ga0335029_0084681_2116_2262	F009685	AGGAGG	MKMSDQYVDSVLAEAQKLLWGGSETENIQAHNLISKLIKDRMGEGEGPK
Ga0335029_0084681_985_1203	F002387	AGGAGG	MASFLEDVNQMVIDACYQDIAEQLLEDWINNNLDEGQYYADKQFAEMSGDKFVQSEFNKFYNLKEGDEDYLC