Scaffold Ga0335029_0083408

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0083408
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2283
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003688	Metagenome / Metatranscriptome	473	Y
F018928	Metagenome / Metatranscriptome	232	Y
F032149	Metagenome	180	Y
F045545	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0083408_137_346	F018928	AGGAG	MIIRSLNTMEKIINKNNNLFWRGWDVVDLKESDTAKTSPMGIRVKDKWYLHRIYKPGRNGWDIPNKYKD
Ga0335029_0083408_1372_1587	F003688	N/A	MRHAVHSIPAPKNFGVQIIDNEHFLTIKLDEKKFLYMGHDEKISALQYVVKLKKALEHCGAIVLVTREAIK
Ga0335029_0083408_1584_1715	F045545	GAGG	MIKQIIMFFVCKIKSHSLVEAGACPFTGKSYTACLRCGVTIAK
Ga0335029_0083408_1691_1840	F032149	N/A	MWSNNRKMKKKIIILILSTISILVAINLFFASRLSQLSDLDLFDIEEND