Scaffold Ga0335029_0075419

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0075419
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2423
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009266	Metagenome / Metatranscriptome	320	Y
F010618	Metagenome	301	N
F027179	Metagenome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0075419_1007_1318	F009266	AGAAG	MTDKERKILDKEIEYLCEQQDRVKAIREYTGINPGFTFLREVDIIESLYKSLLENRKYDKSTYFSCTTSGWHVVYLRDKKTYKKGEKFNIKIFHTFVWSDNCE
Ga0335029_0075419_1774_1965	F027179	AGGA	MISMSDGLFLYKSSDGYVVMDENDNILKLSKTYQTCIRYILKTLHSRRVAEREAIEEIDKSKV
Ga0335029_0075419_2222_2422	F010618	N/A	AKLQELEKKYEQYSQDTEVVLAIHSKNEFNPEVNLDYIDEVLHPALDTFSGYICRIVLCGEIEQED