Scaffold Ga0335029_0053334

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0053334
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2961
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000141	Metagenome / Metatranscriptome	1941	Y
F043834	Metagenome	155	N
F100682	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0053334_2_289	F000141	N/A	WYVHNATVGNKDITIMHPQFRCNGCKRDTEFLWLDKLDTPEGFKAYQCMDCGCVGVKNVVEALHIPDSEICRCDKCGGWKFEAVVCHTCQLIGAK
Ga0335029_0053334_2805_2960	F043834	N/A	MGLLSALGINKKTESVQAQYAPAIMDTAYGYGSFTTGVGNFPGGLDRNFAMQ
Ga0335029_0053334_413_559	F100682	N/A	MHLGLYLRVVAGVRMPEATAEDWAKQNKLRQEWLANNPDADYIGWTSI