Scaffold Ga0335029_0049372

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0049372
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3093
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F008812	Metagenome / Metatranscriptome	327	Y
F089832	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0049372_1381_1614	F089832	AGGAG	MPKYYIKCGTLELIYSTDKKPFGAAKDALWETNKFDVLDEYFYVDERGFKDYATALPDTKVYKSAKVIQKAGWTLEG
Ga0335029_0049372_1788_2120	F008812	AGG	MIQWVGILIAILGLAYNGVKDYQKGDIKIPKLPQKQVLTKPVYPVQYCLMAYDPNIDKVFYLHENGQWHDYAPQQRRYETTPTQHGQAQGQASVANAYGTQGRSERHYVR
Ga0335029_0049372_2_655	F000325	N/A	SRPVGDTCPPDCDYLGNGCYAEATENQYKNARTAGFANVVTEKNKIRSMILDAKRREKSIRWHERGDWFLNGELDLDYVANVTWACESILADGDSLPDMWFYTHIYDSRLVSLEKYMNVYASVHDDNDMGEAMAQGFKLFAWCDSDMKVAPKRPKNKAKADAWRKALPKLVVLNATKFVVCPEIRRGRSVITCTGTKDSISCDMCVKGLANVLFPAH