Scaffold Ga0335029_0046268

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0046268
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3209
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005090	Metagenome / Metatranscriptome	412	N
F011392	Metagenome / Metatranscriptome	291	Y
F024315	Metagenome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0046268_1036_1614	F005090	N/A	MKKKMKFVWCGVNFELPAECLRTTDYWGKTLDNPYISIGRKECLAIAKQFMKAKYPHLLVWGNSETFANGNSASVYVCNADGSDLDMNSKEWNEINSFVRQMCGGRYDGWSESYEYGEPGKSDNGTKLDFGTKYLHVENKAPHGSWPSAIKTIKGLIAGEYVFGVLSLDKAIEKAKGYGYSEPTIKKALELI
Ga0335029_0046268_1697_2263	F011392	N/A	MNLSIKELNELIYSLGITASKGIFVNKELNASLIDKMYSELNSKIAEEAIDEFTDELLGGDLEFSSHFVSNDEADEDYRSTLIQDSNRYESSVEKDYDNHLSKLKTRGYITQTLLDYVDKKGAVSHGELETYYKIITGGSNSFSHILDNLRTPYKNRKTQRYIAKEGKRYTEAKYVIKVANPSNWVVA
Ga0335029_0046268_748_1014	F024315	N/A	MNYSQLSKLSVEELRSINQMVVQLIKQKRTIESLEKKIGLQVGMKVRVNHPKLHGRELEVIKINRTKANLRVVGGFASYNVPVSLIQF