NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335029_0040232

Scaffold Ga0335029_0040232


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0040232 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3476
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022633Metagenome213N
F071181Metagenome122Y
F077449Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0040232_1_276F022633N/AMIDFLKSIGINLGLTIAGFFGALLLAPKMKNWKMQLIAVLSGTLSATYIAPVIIGILNIKAPNIEYGLAFIVGFSGVKITEVLEVRIMKLLK
Ga0335029_0040232_2445_2954F077449N/AMSSWVTIKNDLIAFAESHLQLNAVGFGDPLAIGTDNTINLRTADRDRVIYPLLFVDAQSASMPIGATNLSVSVLVMDRVADLRGLDATISGDVRYRWTDNEDEVLSDTLRIMQDFVAEFTDDPDRDYTITGAVSATRFVEARDDKVAGWQATVVFELPFSRNVCQIPTR
Ga0335029_0040232_279_554F071181N/AMATFRKYAFPTQAEFEAFYQLSQPDATCVELGEIDNTYCVDLLWDDQPAPDWEQFETWPPPVGVHTFLGWDEQYGKDYTERDDLNNTLNED
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