Scaffold Ga0335029_0031480

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0031480
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3984
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007690	Metagenome	346	Y
F016000	Metagenome / Metatranscriptome	250	Y
F090305	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0031480_207_527	F007690	N/A	MLTIENINKLEGQGIWDGWEVREVYEGKLNDTYIFKLVQFYNGWPTRECTIMLERTGHKITNKSNLVYFFIYKSQRTDICATADWLADKDNMIAKLEYILVNKENL
Ga0335029_0031480_3643_3984	F016000	N/A	VHEFNITPKQWDLLKDKLAEVKDETPIGFPFGVPNTAPIQTLPHITPSPTNPYRPYEVYCGDTNGTTITTTPNVGGSITIANPPFGFGVTSTAYGYPSGSAWHYTNGKTHNED
Ga0335029_0031480_806_1138	F090305	N/A	MLTIENIEGLNHKYLGKNWQVAEAKASGPKKWLPTEHYSISLGRGNSGAAILIWRNINPLTKQYHVHVCYDSFDNTIYEGAFSKRVIMDKGHFLASMMGYINAEYEMRKK