Scaffold Ga0335029_0021852

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0021852
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4861
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001754	Metagenome / Metatranscriptome	641	Y
F007113	Metagenome / Metatranscriptome	357	Y
F017998	Metagenome	237	Y
F018718	Metagenome / Metatranscriptome	233	Y
F031098	Metagenome / Metatranscriptome	183	N
F038234	Metagenome	166	Y
F062757	Metagenome	130	N
F084218	Metagenome	112	N
F090305	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0021852_1_333	F001754	N/A	YQMIKNYNMNNTIYTNFAASKLSNNPRFEVVVSFRDFLGKEHHIVCKNRKKLAEANQFLKMFKSETVRINSILSEYPVVLGKFPKKYHSEIKKELASAGFSTVSNFLIGK
Ga0335029_0021852_1131_1355	F084218	N/A	MMSDSHSVWEVGMRHEAGIKAKIHALIGIHREDGIGLCDEIKDIAGSDYTDYDSSGFGLKYRVIHSWFKPYIGE
Ga0335029_0021852_2437_2598	F031098	N/A	MKTYYDIHILSYSGDSIFIKGVSYSQMMKIANDNPSCQKIEILKEYSKKQSKY
Ga0335029_0021852_3275_3523	F017998	N/A	MEIMNLERLDLEKYELLERERNNTIADPLYQQWMSELGVSSSYTDREGIIRANELNNQYTYSVLAGNKSTKFSVSSILSILK
Ga0335029_0021852_3973_4248	F038234	N/A	MLTIKNIDSLKGTYIGHWKIHYVANLQNSYLIKVVHNGSPFDMFNLMIGRVKTSNGDYLMYCQETDNIHYLPIECIRNSYTFIRFLIDELI
Ga0335029_0021852_4250_4585	F062757	N/A	MLHIQNIRKLGGRRLFGGWIITAVGGNPNEPQYLFDIHCNGPIGNRIDGCTISLNRRGQLQRTMGRPDVLSYFLYYNGEQTDVCVTKDWILNPENFISQLKYIINTYHNKR
Ga0335029_0021852_4588_4860	F090305	N/A	MLQIENIGKLTNTKLGEWTVVDAEARRPMKWLPTEHYCITLDKAGIGGAAILIDRNINRLTKQYHVYVCYDEFSNRIYEGAFSKRVIMDKG
Ga0335029_0021852_651_821	F007113	N/A	MKLNLTPEELKTVEIALAELFNSDTWTSGRKEDDIDKIANRAQYLLHVIESYNKSK
Ga0335029_0021852_823_1053	F018718	N/A	MNIREYYVSKYPTDDMGAGINPKATFAGLLNQLIVGGDVYEYLYVYDSIIRERLFERLAEELEVSYEYVYKLWYNN