Scaffold Ga0335029_0017801

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0017801
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5432
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (47.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011754	Metagenome / Metatranscriptome	287	Y
F012023	Metagenome / Metatranscriptome	284	Y
F053829	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0017801_1301_1465	F012023	AGG	MEKIDYKKLNERIVEQAYENVLTKEQFQKLIQDKFERASRYREALEKSPTFSVN
Ga0335029_0017801_3170_3577	F011754	GAG	MKIGFSLGRCVRDIVRGDVHIDDVAFIIAATSIHDPEQLAGVIENYMYRDDDYLYGLDEDQCQAVALELWKTNRVLQPRRQGLHRHKQPENAVWVDMFPTVISESDAVKKAWDSYRFMLHMVENVDQEAMATFKG
Ga0335029_0017801_5108_5362	F053829	AGGA	MSGTEISTLGELLATRARAVFPYRVNFDTIGYESLDNMRAWCETNCKGIWRIEHVHALYFQFSDDHDAMMFMLRWSGAEGNKLK